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Cayuela, H., Rougemont, Q., Prunier, J., Moore, J.-S., Clobert, J., Besnard, A., Bernatchez, L. (In press) Towards a unified framework to study dispersal in wild populations using demographic and genetic approaches. Molecular Ecology (MEC-18-0768.R1)
Moore, J.-S*., Chapman, J.*, Mazerolle, M., Harris, L.N., Taylor, E.B. (In press) Comment: Premature alarm on the impacts of climate change on Arctic Char in Lake Hazen. Nature Communications (NCOMMS-18-17731A) *contributed equally
Beacham, T.D., Wallace, C., Jonsen K., McIntosh, B., Candy, J.R., Willis, D., Lynch, C., Moore, J.-S., Bernatchez, L., and Withler, RE (In press) Comparison of coded-wire tagging with parentage-based tagging and genetic stock identification in a large-scale coho salmon fisheries application in British Columbia, Canada. Evolutionary Applications (EVA-2018-142-OA)
Lopez, M., L. Benestan, J.-S. Moore, C. Perrier, J. Gilbey, A. Di Genova, A. Maass, D. Díaz, J.-P. Lhorente, K. Correa, R. Neira, Roberto, L. Bernatchez, J. Yáñez (In press) Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L) populations with different geographical origins. Evolutionary Applications (EVA-2017-189-SOA)
Moore, J.-S., Benestan, L. (2018) Perspective: Let’s talk about sex: a rigorous statistical framework to assign the sex of individuals from reduced-representation sequencing data. Molecular Ecology Resources, 18:191-193.
I. Hashemzadeh Segherloo, E. Normandeau, L. Benestan, C. Rougeux, G. Coté, J.-S. Moore, N. Allah Ghaedrahmati, & L. Bernatchez (2018) Evidence for ancient sympatric speciation in fish from subterranean habitats. Scientific Reports, Article number 2909
Moore, J.-S., L.N. Harris, J. Le Luyer, B.J.G. Sutherland, Q. Rougemont, R.F. Tallman, A.T. Fisk & L. Bernatchez (2017) Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char. Molecular Ecology, 26(24): 6784-6800 pdf
Benestan, L., J.-S. Moore, B.J. Sutherland, J. LeLuyer, N. Rycroft, J. Attema, L.N. Harris, R.F. Tallman, C. Rougeux, E. Normandeau, L. Bernatchez. (2017) Sex matters in Massive Parallel Sequencing: evidence for biases in genetic parameter estimation and investigation of sex determination systems. Molecular Ecology , 26(24): 6767–6783 pdf
Hanson, D., J.-S. Moore, E.B. Taylor, R.D.H. Barrett, & A.P. Hendry (2016) Assessing reproductive isolation using a contact zone between parapatric lake-stream stickleback ecotypes. Journal of Evolutionary Biology, 29: 2491-2501 pdf
Harris, L.N., J.-S. Moore, R. Bajno & R.F. Tallman (2016) Genetic Stock Structure of Anadromous Arctic Char in Canada’s Central Arctic: Potential Implications for the Management of Canada’s Largest Arctic Char Commercial Fishery. North American Journal of Fisheries Management, 36(6):1473-1488. pdf
Moore, J.-S., L.N. Harris, S. Kessel, L. Bernatchez, R.F. Tallman, A.T. Fisk (2016) Preference for near-shore and estuarine habitats in anadromous Arctic char (Salvelinus alpinus) from the Canadian high Arctic (Victoria Island, NU) revealed by acoustic telemetry. Canadian Journal of Fisheries and Aquatic Sciences, 73(9): 1434-1445 pdf
Moore, J.-S., Bajno, R., Reist, J.D. & Taylor, E.B. (2015) Post-glacial recolonization of the North American Arctic by Arctic char (Salvelinus alpinus): genetic evidence of multiple northern refugia and hybridization between glacial lineages. Journal of Biogeography, 42: 2089-2100. pdf
Moore, J.-S.*, V. Bourret*, M. Dionne, I. Bradbury, P. O'Reilly, M. Kent, G. Chaput, & L. Bernatchez (2014) Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci.
Molecular Ecology, 23: 5680-5697. *first authors pdf
Harris, L.N., J.-S. Moore, McDermid, C.G. & Swanson, H.K. (2014) Long-distance anadromous migrations in a freshwater specialist: the lake trout (Salvelinus namaycush). Canadian Field Naturalist, 128: 260-264. pdf
Harris, L. N., J.-S. Moore, P. Galpern, R. F. Tallman, & E. B. Taylor. (2014). Geographic and landscape influences on fine-scale, hierarchical population structure in northern Canadian populations of anadromous Arctic char (Salvelinus alpinus). Environmental Biology of Fishes, 97:1233-1252. pdf
Mee, J.A. & Moore, J.-S. (2014) The ecological and evolutionary implications of microrefugia. Journal of Biogeography, 41: 837-841. pdf
Moore, J.-S., T.N. Loewen, L.N. Harris & R.F. Tallman (2014) Genetic analysis of sympatric migratory ecotypes of Arctic charr Salvelinus alpinus: alternative mating tactics or reproductively isolated strategies? Journal of Fish Biology, 84:145-162. pdf
Vines TH, AYK Albert, RL Andrew, F Débarre, D Bock, MT Franklin, KJ Gilbert, J-S Moore, S Renaut, DJ Rennison (2014) How does the availability of research data change with article age? Current Biology, 24:1-4. pdf
Moore, J.-S., L.N. Harris, R.F. Tallman & E.B. Taylor (2013) The interplay between dispersal and gene flow in anadromous Arctic char (Salvelinus alpinus): implications for potential for local adaptation. Canadian Journal of Fisheries and Aquatic Sciences, 70: 1327-1338. pdf
Baker, J.A., Räsänen, K., J.-S. Moore & A.P. Hendry (2013) Genetic and plastic contributions to trait divergence between parapatric habitats: female life-history traits in threespine stickleback within the Misty Lake system. Evolutionary Ecology Research, 15: 473-487. pdf
Moore, J.-S., & D.J. Fraser (2013) Puny males punch above their weight to preserve genetic diversity in a declining Atlantic salmon population. Molecular Ecology, 22:2364-2365. *Perspective pdf
Vines TH, RL Andrew, DG Bock, MT Franklin, KJ Gilbert, NC Kane, EJ Kleynhans, J.-S. Moore, BT Moyers, S Renaut, DJ Rennison, T Veen, S Yeaman (2013) Mandated archiving greatly improves access to research data. FASEB Journal, 27:1304-1308. pdf
K. J. Gilbert, R. L. Andrew, D. G. Bock, M. T. Franklin, N. C. Kane, J.-S. Moore, B. T. Moyers, S. Renaut, D. J. Rennison, T. Veen, & T. H. Vines (2012) Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE. Molecular Ecology, 21:4925-4930. pdf
Gerstein, A., & J.-S. Moore (2011) Perspective: Small is the new big: Assessing the population structure of microorganisms. Molecular Ecology, 20:4385-4387. *Perspective pdf
Crispo, E.*, J.-S. Moore*, J. Lee-Yaw, S.M. Gray, & B. Haller (2011) Broken barriers: Human-induced changes to gene flow and introgression in animals. BioEssays, 33:508-518. *Contributed equally pdf
Moore, J.-S. & A.P. Hendry (2009) Can gene flow have negative demographic consequences? Mixed evidence from stream stickleback. Philosophical Transactions of the Royal Society B, 364:1533-1542. pdf
Moore, J.-S., J.L. Gow, E.B. Taylor, & A.P. Hendry (2007) Quantifying the constraining influence of gene flow on adaptive divergence in the lake-stream threespine stickleback system. Evolution, 61:2015-2027. pdf
Moore, J.-S., & A.P. Hendry (2005) Both selection and gene flow are necessary to explain adaptive divergence: evidence from clinal variation in stream stickleback. Evolutionary Ecology Research, 7:871-886. pdf
Peer-reviewed technical reports:
Moore, J.-S., L.N. Harris, & R. F. Tallman (2014) A review of anadromous Arctic char (Salvelinus alpinus) migratory behaviour: implications for genetic population structure and fisheries management. Can. Manuscr. Rep. Fish. Aquat. Sci. 3051. vi + 27 pp. pdf
Moore, J.-S., M. VanGerwen-Toyne, C. Lewis, R.F. Tallman (2014) Population Structure, Genetic Diversity and Dispersal of Anadromous Arctic Char (Salvelinus alpinus) in Frobisher Bay, Nunavut, Inferred from Microsatellite Markers. Can. Manuscr. Rep. Fish. Aquat. Sci. 3046. vi + 22 p. pdf
VanGerwen-Toyne, M., C. Lewis, R.F. Tallman, Z. Martin, J.-S. Moore (2013) Information to support the assessment of Arctic Char (Salvelinus alpinus) in the Sylvia Grinnell River, Nunavut, 2009-2011. DFO Can. Sci. Advis. Sec. Res. Doc. 2013/109. vi + 19 p. pdf
Moore, J.-S., J. Rosenfeld (2013) Partial validation of streamflow metrics and runoff parameters, and identification of physical variables to help predict streamflow sensitivity using selected EcoProvinces within British Columbia. BC Ministry of Environment, Fisheries Research Report RD142, Victoria, B.C. pdf
Moore, J.-S., D. Nowosad, J. Mee (2012) COSEWIC status report on Channel Darter Percina copelandi in Canada. Prepared for the Committee on the Status of Endangered Wildlife in Canada.
Moore, J.-S*., Chapman, J.*, Mazerolle, M., Harris, L.N., Taylor, E.B. (In press) Comment: Premature alarm on the impacts of climate change on Arctic Char in Lake Hazen. Nature Communications (NCOMMS-18-17731A) *contributed equally
Beacham, T.D., Wallace, C., Jonsen K., McIntosh, B., Candy, J.R., Willis, D., Lynch, C., Moore, J.-S., Bernatchez, L., and Withler, RE (In press) Comparison of coded-wire tagging with parentage-based tagging and genetic stock identification in a large-scale coho salmon fisheries application in British Columbia, Canada. Evolutionary Applications (EVA-2018-142-OA)
Lopez, M., L. Benestan, J.-S. Moore, C. Perrier, J. Gilbey, A. Di Genova, A. Maass, D. Díaz, J.-P. Lhorente, K. Correa, R. Neira, Roberto, L. Bernatchez, J. Yáñez (In press) Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L) populations with different geographical origins. Evolutionary Applications (EVA-2017-189-SOA)
Moore, J.-S., Benestan, L. (2018) Perspective: Let’s talk about sex: a rigorous statistical framework to assign the sex of individuals from reduced-representation sequencing data. Molecular Ecology Resources, 18:191-193.
I. Hashemzadeh Segherloo, E. Normandeau, L. Benestan, C. Rougeux, G. Coté, J.-S. Moore, N. Allah Ghaedrahmati, & L. Bernatchez (2018) Evidence for ancient sympatric speciation in fish from subterranean habitats. Scientific Reports, Article number 2909
Moore, J.-S., L.N. Harris, J. Le Luyer, B.J.G. Sutherland, Q. Rougemont, R.F. Tallman, A.T. Fisk & L. Bernatchez (2017) Genomics and telemetry suggest a role for migration harshness in determining overwintering habitat choice, but not gene flow, in anadromous Arctic Char. Molecular Ecology, 26(24): 6784-6800 pdf
Benestan, L., J.-S. Moore, B.J. Sutherland, J. LeLuyer, N. Rycroft, J. Attema, L.N. Harris, R.F. Tallman, C. Rougeux, E. Normandeau, L. Bernatchez. (2017) Sex matters in Massive Parallel Sequencing: evidence for biases in genetic parameter estimation and investigation of sex determination systems. Molecular Ecology , 26(24): 6767–6783 pdf
Hanson, D., J.-S. Moore, E.B. Taylor, R.D.H. Barrett, & A.P. Hendry (2016) Assessing reproductive isolation using a contact zone between parapatric lake-stream stickleback ecotypes. Journal of Evolutionary Biology, 29: 2491-2501 pdf
Harris, L.N., J.-S. Moore, R. Bajno & R.F. Tallman (2016) Genetic Stock Structure of Anadromous Arctic Char in Canada’s Central Arctic: Potential Implications for the Management of Canada’s Largest Arctic Char Commercial Fishery. North American Journal of Fisheries Management, 36(6):1473-1488. pdf
Moore, J.-S., L.N. Harris, S. Kessel, L. Bernatchez, R.F. Tallman, A.T. Fisk (2016) Preference for near-shore and estuarine habitats in anadromous Arctic char (Salvelinus alpinus) from the Canadian high Arctic (Victoria Island, NU) revealed by acoustic telemetry. Canadian Journal of Fisheries and Aquatic Sciences, 73(9): 1434-1445 pdf
Moore, J.-S., Bajno, R., Reist, J.D. & Taylor, E.B. (2015) Post-glacial recolonization of the North American Arctic by Arctic char (Salvelinus alpinus): genetic evidence of multiple northern refugia and hybridization between glacial lineages. Journal of Biogeography, 42: 2089-2100. pdf
Moore, J.-S.*, V. Bourret*, M. Dionne, I. Bradbury, P. O'Reilly, M. Kent, G. Chaput, & L. Bernatchez (2014) Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci.
Molecular Ecology, 23: 5680-5697. *first authors pdf
Harris, L.N., J.-S. Moore, McDermid, C.G. & Swanson, H.K. (2014) Long-distance anadromous migrations in a freshwater specialist: the lake trout (Salvelinus namaycush). Canadian Field Naturalist, 128: 260-264. pdf
Harris, L. N., J.-S. Moore, P. Galpern, R. F. Tallman, & E. B. Taylor. (2014). Geographic and landscape influences on fine-scale, hierarchical population structure in northern Canadian populations of anadromous Arctic char (Salvelinus alpinus). Environmental Biology of Fishes, 97:1233-1252. pdf
Mee, J.A. & Moore, J.-S. (2014) The ecological and evolutionary implications of microrefugia. Journal of Biogeography, 41: 837-841. pdf
Moore, J.-S., T.N. Loewen, L.N. Harris & R.F. Tallman (2014) Genetic analysis of sympatric migratory ecotypes of Arctic charr Salvelinus alpinus: alternative mating tactics or reproductively isolated strategies? Journal of Fish Biology, 84:145-162. pdf
Vines TH, AYK Albert, RL Andrew, F Débarre, D Bock, MT Franklin, KJ Gilbert, J-S Moore, S Renaut, DJ Rennison (2014) How does the availability of research data change with article age? Current Biology, 24:1-4. pdf
Moore, J.-S., L.N. Harris, R.F. Tallman & E.B. Taylor (2013) The interplay between dispersal and gene flow in anadromous Arctic char (Salvelinus alpinus): implications for potential for local adaptation. Canadian Journal of Fisheries and Aquatic Sciences, 70: 1327-1338. pdf
Baker, J.A., Räsänen, K., J.-S. Moore & A.P. Hendry (2013) Genetic and plastic contributions to trait divergence between parapatric habitats: female life-history traits in threespine stickleback within the Misty Lake system. Evolutionary Ecology Research, 15: 473-487. pdf
Moore, J.-S., & D.J. Fraser (2013) Puny males punch above their weight to preserve genetic diversity in a declining Atlantic salmon population. Molecular Ecology, 22:2364-2365. *Perspective pdf
Vines TH, RL Andrew, DG Bock, MT Franklin, KJ Gilbert, NC Kane, EJ Kleynhans, J.-S. Moore, BT Moyers, S Renaut, DJ Rennison, T Veen, S Yeaman (2013) Mandated archiving greatly improves access to research data. FASEB Journal, 27:1304-1308. pdf
K. J. Gilbert, R. L. Andrew, D. G. Bock, M. T. Franklin, N. C. Kane, J.-S. Moore, B. T. Moyers, S. Renaut, D. J. Rennison, T. Veen, & T. H. Vines (2012) Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE. Molecular Ecology, 21:4925-4930. pdf
Gerstein, A., & J.-S. Moore (2011) Perspective: Small is the new big: Assessing the population structure of microorganisms. Molecular Ecology, 20:4385-4387. *Perspective pdf
Crispo, E.*, J.-S. Moore*, J. Lee-Yaw, S.M. Gray, & B. Haller (2011) Broken barriers: Human-induced changes to gene flow and introgression in animals. BioEssays, 33:508-518. *Contributed equally pdf
Moore, J.-S. & A.P. Hendry (2009) Can gene flow have negative demographic consequences? Mixed evidence from stream stickleback. Philosophical Transactions of the Royal Society B, 364:1533-1542. pdf
Moore, J.-S., J.L. Gow, E.B. Taylor, & A.P. Hendry (2007) Quantifying the constraining influence of gene flow on adaptive divergence in the lake-stream threespine stickleback system. Evolution, 61:2015-2027. pdf
Moore, J.-S., & A.P. Hendry (2005) Both selection and gene flow are necessary to explain adaptive divergence: evidence from clinal variation in stream stickleback. Evolutionary Ecology Research, 7:871-886. pdf
Peer-reviewed technical reports:
Moore, J.-S., L.N. Harris, & R. F. Tallman (2014) A review of anadromous Arctic char (Salvelinus alpinus) migratory behaviour: implications for genetic population structure and fisheries management. Can. Manuscr. Rep. Fish. Aquat. Sci. 3051. vi + 27 pp. pdf
Moore, J.-S., M. VanGerwen-Toyne, C. Lewis, R.F. Tallman (2014) Population Structure, Genetic Diversity and Dispersal of Anadromous Arctic Char (Salvelinus alpinus) in Frobisher Bay, Nunavut, Inferred from Microsatellite Markers. Can. Manuscr. Rep. Fish. Aquat. Sci. 3046. vi + 22 p. pdf
VanGerwen-Toyne, M., C. Lewis, R.F. Tallman, Z. Martin, J.-S. Moore (2013) Information to support the assessment of Arctic Char (Salvelinus alpinus) in the Sylvia Grinnell River, Nunavut, 2009-2011. DFO Can. Sci. Advis. Sec. Res. Doc. 2013/109. vi + 19 p. pdf
Moore, J.-S., J. Rosenfeld (2013) Partial validation of streamflow metrics and runoff parameters, and identification of physical variables to help predict streamflow sensitivity using selected EcoProvinces within British Columbia. BC Ministry of Environment, Fisheries Research Report RD142, Victoria, B.C. pdf
Moore, J.-S., D. Nowosad, J. Mee (2012) COSEWIC status report on Channel Darter Percina copelandi in Canada. Prepared for the Committee on the Status of Endangered Wildlife in Canada.
